PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0080089.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 492aa MW: 54725.3 Da PI: 4.9998 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.2e-19 | 41 | 88 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ede+lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l Lj0g3v0080089.2 41 KGPWTSAEDEILVDYVKKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 88 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 94 | 137 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++TteE+ +++++++++G++ W++ a++++ gRt++++k++w++ Lj0g3v0080089.2 94 KGAFTTEEENRILELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 137 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.038 | 36 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-30 | 38 | 135 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 38 | 91 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-15 | 40 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 41 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-12 | 43 | 88 | No hit | No description |
PROSITE profile | PS51294 | 24.417 | 89 | 143 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 92 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 93 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 94 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.13E-11 | 96 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MSSTTTSGSE GQKVTKRRRS SLSAEEGSSG GNSTGEGRLK KGPWTSAEDE ILVDYVKKHG 60 EGNWNAVQKH SGLARCGKSC RLRWANHLRP DLKKGAFTTE EENRILELHA KMGNKWARMA 120 AELPGRTDNE IKNYWNTRIK RMQRAGLPLY PEEICRRVFT GNQENLNVGT LTNEATHHDD 180 LSQTDNNFVA PDVDFRNFKL RRDVLYEPSI FEMPENSVVE QNPDPSRGYI LLPMVHPSKQ 240 LPESDMMHTS LGSAAVFDQY GNHTYENTSD PPKLYGNYTC ENNSDSSLCD PVLSVSYQFH 300 GDNLVGSHAT NGNNSSSSAA VSGATKLELP SLQYFETQQG GWGRPAPQLP SLESVDTLIS 360 PPVELTTQSD PVSPESSGLL ESIIYHSKSL KVSNVDLQDT VPVETDKNLA SNPAKTEWNE 420 QLETHSPLGQ STSDYTPIRM CLVDEPQSVE TEHVHEADTA YSFSNKENLN QINISRPDAV 480 FDLGWFGNDM WQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 39 | 141 | 5 | 106 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00279 | DAP | Transfer from AT2G26960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0080089.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543825.2 | 0.0 | transcription factor GAMYB isoform X1 | ||||
Refseq | XP_006593626.1 | 0.0 | transcription factor GAMYB isoform X2 | ||||
Refseq | XP_006593627.1 | 0.0 | transcription factor GAMYB isoform X2 | ||||
Refseq | XP_014620817.1 | 0.0 | transcription factor GAMYB isoform X2 | ||||
TrEMBL | A0A0R0GJT2 | 0.0 | A0A0R0GJT2_SOYBN; Uncharacterized protein | ||||
TrEMBL | K7LXA1 | 0.0 | K7LXA1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G04031.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26960.1 | 7e-77 | myb domain protein 81 |