PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0071689.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 694aa    MW: 76942.3 Da    PI: 4.3161
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0071689.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.1e-10366388426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C f++rtGtCk+G +C+F+H+
  Lj0g3v0071689.1 366 EDCAFYLRTGTCKFGFNCRFNHP 388
                      89********************9 PP
2zf-CCCH28.52.6e-09411433325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      + +C++++r+G Ck+G  CkF+H
  Lj0g3v0071689.1 411 QTECKYYLRSGGCKFGKACKFNH 433
                      679******************** PP
3zf-CCCH38.12.5e-12457480326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++C +++rtG Ck+G++CkF+H+
  Lj0g3v0071689.1 457 EKECLYYMRTGSCKFGANCKFNHP 480
                      679********************9 PP
4zf-CCCH24.35.5e-08595617527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C+ff++tG Ck+ ++CkF+H++
  Lj0g3v0071689.1 595 GCSFFLKTGDCKFKSNCKFHHPK 617
                      5********************96 PP
5zf-CCCH322.1e-10639663327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +  C+ ++r+G+Ck+G+ C+F H++
  Lj0g3v0071689.1 639 QNVCSQYSRYGICKFGPACRFDHPR 663
                      568********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.324362390IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-4362389IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5363390IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-8366388IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4408435IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352408436IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7411433IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6412438IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5414437IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662454482IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5454481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6455481IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10457480IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4460479IPR000571Zinc finger, CCCH-type
SMARTSM003560.0076590617IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.089590618IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5595620IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5595617IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6634661IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098636664IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4636663IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7639663IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MGSSNSSHPQ FTPIPHHDHD PQPSDLNHLA QVHDDALAGD LHNKLDFKDG DDETQNKGSN  60
FEPGHGQLYD EAAVPEPVKE QRSDDGADSN EQLHDEAAVP EPDKEQKCDA DDEQLNYEAA  120
VPEPGKEQRC DDDDGLGNQQ LNDEAAVQEP CKEQKCDDVH DGDEQLYDEA AVPEPCKEQK  180
CDDVHDGNEQ LYDGAAVPEP AKEQRCDDEA DVPDLGKEQK CDDVHNGNEQ LYDGASVPEP  240
GKVQRCDEEP GEEQRCDDGD ANVKLYDEAA IPEPGKEQSC DDDGANQQLY DEAAVPDPGM  300
DQWYNDYYDG WNGGDEGYNW IENASESWNN MGDGDVVYGV EGSEVENNDE RSSCRAQQYP  360
LRPDAEDCAF YLRTGTCKFG FNCRFNHPVR RKSKAVKEVG ERDDTEERSG QTECKYYLRS  420
GGCKFGKACK FNHTREENSS APDIELNFLG LPIRLGEKEC LYYMRTGSCK FGANCKFNHP  480
DPTAVGGCDT PSGYSTNGSS ISLQGVSQSS IPSWSSTRTL KETSLVPIIL SQNSGVSHQS  540
SEWSGYQAPG YLSERSMHPP STYVMNNPAS ETTIYMHHQK KMPAYDFPER PGEPGCSFFL  600
KTGDCKFKSN CKFHHPKNRI TRVPPCSLSD KGLPLRPDQN VCSQYSRYGI CKFGPACRFD  660
HPRNPPPSTM PVLDQQSSFS GSGGASDVII QQHM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0071689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353403e-66AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361829.10.0zinc finger CCCH domain-containing protein 43
TrEMBLA0A445KB400.0A0A445KB40_GLYSO; Zinc finger CCCH domain-containing protein 43 isoform A
TrEMBLK7KVL20.0K7KVL2_SOYBN; Uncharacterized protein
STRINGGLYMA06G18253.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-126C3H family protein