PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0068589.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 384aa    MW: 42128.5 Da    PI: 4.5631
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0068589.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.5e-121965148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd  l+ +v++ G + W+++ +  g+ R++ +c+ rw ++l
  Lj0g3v0068589.1 19 KGPWSIEEDMMLIAYVERNGEN-WNAVKNNSGLLRCGPSCRRRWVNHL 65
                     79******************88.*********99***********996 PP
2Myb_DNA-binding44.63.4e-1471113145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g+ ++eE+  +v++++++G++ W++Ia  ++ gRt++++k++w+
  Lj0g3v0068589.1  71 KGAISAEEQRTIVELHAMFGNK-WAKIATQLP-GRTDNEIKNFWH 113
                      67889*****************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.5861465IPR017930Myb domain
SuperFamilySSF466894.69E-2616112IPR009057Homeodomain-like
SMARTSM007172.5E-91867IPR001005SANT/Myb domain
PfamPF002493.2E-101965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-182072IPR009057Homeodomain-like
CDDcd001674.32E-62165No hitNo description
PROSITE profilePS5129423.966120IPR017930Myb domain
SMARTSM007171.1E-1370118IPR001005SANT/Myb domain
PfamPF002495.5E-1371113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2273119IPR009057Homeodomain-like
CDDcd001677.36E-1075113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAENNSNYNN NTNKSDLRKG PWSIEEDMML IAYVERNGEN WNAVKNNSGL LRCGPSCRRR  60
WVNHLKPGLK KGAISAEEQR TIVELHAMFG NKWAKIATQL PGRTDNEIKN FWHSRVKKRE  120
KAGLPLYPPE VLARAEAYHQ PQKEKQLQHI LSSSFSAGAD YPNNPGVLLP NQPTFGNPLA  180
NHLDPAANYY TSSYPPLPLS PLPQFEFFNK NGGDRNIALP LSPVSAYVTG SASEISATIT  240
TAAAGSVTPV SSLASEFEGW LEATSNMAND YHEDVAPFPY PPLPGNTGLL GDMVLDAESL  300
SLNNKGKNIM ADQDDAAEGS SNTVKENNAE ATNENQSNEL GENQIGVHVE EMNDYDDLYS  360
QIDFSELSWT FGDFGSGSDV SDIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26161194107B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0068589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.14e-52myb domain protein 33