PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0067609.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WRKY

Protein Properties

Length: 350aa MW: 38736.2 Da PI: 4.801

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0067609.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.2	4.4e-30	249	308	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Lj0g3v0067609.1 249 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHT 308 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.3E-31	234	310	IPR003657	WRKY domain
SuperFamily	SSF118290	9.15E-27	242	310	IPR003657	WRKY domain
PROSITE profile	PS50811	27.887	244	310	IPR003657	WRKY domain
SMART	SM00774	3.0E-35	249	309	IPR003657	WRKY domain
Pfam	PF03106	3.1E-26	250	307	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDQFVSGRPE DGDCGVLKEE KKSENSVCDD QSSHKQDTVV EELPIANAEM SMVEAEPSAS 60 PSMKEDEVDD QLEITKAQMG EVREENQRLK MSLNKIMNEY RTLEMQFQDI AKQDQTKKNI 120 VADDNNHQEI MEESDLVSLS LGRVPSNPRN IKVSKPLKDH EEFNEDLTLG LDCKLETSKS 180 GSTNEAALPN PSPVNSCEVP KEEEAGETSP PTTKAPLKTM RDIEDEVAQQ THAKKARVCV 240 RARCDTPTMN DGCQWRKYGQ KISKGNPCPR AYYRCTVAPS CPVRKQVQRC AEDMSILITT 300 YEGTHNHTLP HSATAMASTT SAAASMLLSG SSTSSTTNNN LHGLNFYLSS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDQFVSGRPE DGDCGVLKEE KKSENSVCDD QSSHKQDTVV EELPIANAEM SMVEAEPSAS  60
PSMKEDEVDD QLEITKAQMG EVREENQRLK MSLNKIMNEY RTLEMQFQDI AKQDQTKKNI  120
VADDNNHQEI MEESDLVSLS LGRVPSNPRN IKVSKPLKDH EEFNEDLTLG LDCKLETSKS  180
GSTNEAALPN PSPVNSCEVP KEEEAGETSP PTTKAPLKTM RDIEDEVAQQ THAKKARVCV  240
RARCDTPTMN DGCQWRKYGQ KISKGNPCPR AYYRCTVAPS CPVRKQVQRC AEDMSILITT  300
YEGTHNHTLP HSATAMASTT SAAASMLLSG SSTSSTTNNN LHGLNFYLSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	236	310	1	74	WRKY transcription factor 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269\|PubMed:24884371}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0067609.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027369128.1	1e-156	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	5e-97	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A371H1J0	1e-167	A0A371H1J0_MUCPR; Putative WRKY transcription factor 72 (Fragment)
STRING	XP_004508768.1	1e-147	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	4e-64	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]