PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0064839.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 538aa    MW: 60113.8 Da    PI: 5.5075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0064839.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.2e-07247267526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f + G C  Gd+C +aHg
  Lj0g3v0064839.1 247 PCPEFKK-GPCIKGDSCEYAHG 267
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.7E-1719165IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.75E-1437146IPR020683Ankyrin repeat-containing domain
PfamPF127962.6E-862135IPR020683Ankyrin repeat-containing domain
SMARTSM002481.46696IPR002110Ankyrin repeat
PROSITE profilePS5029713.3966161IPR020683Ankyrin repeat-containing domain
CDDcd002047.20E-1268144No hitNo description
SMARTSM002480.0017101133IPR002110Ankyrin repeat
PROSITE profilePS5008811.033101136IPR002110Ankyrin repeat
SMARTSM003564.9E-4242268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.62247269IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4247267IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.301277301IPR000571Zinc finger, CCCH-type
SMARTSM0035616277300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MNKPCQTCLI MEDEHVLHQK KSALLEFAAT DDVVAFKDAV EKDGHDVDEV GLWYGRRVGS  60
KKFGYEERTP LMIAAMFGCK GVLSYILETC HVDVNKACGS DCATALHCAV VGGFAKSPEI  120
VKLLLDASAD VNAVDSNVKR PYDLTFSLSN SRNRVLQAML EGANCIDEGL EEVKKEQTRV  180
SKDYPADPSF PDIRNGIYGT DEFRMFTFKV KPCSRAYSHD WTECPFVHPG ENARRRDPRK  240
YHYSCVPCPE FKKGPCIKGD SCEYAHGVFE SWLHPAQYRT RLCKDETGCT RNVCFFAHKK  300
EELRPLYAST GSALPCSMDS FSTPSLTPSG SPSHAGGTVW KSQNAIPTLQ LSRNRLKSAL  360
NARDSDLDIE LLKLENLRLM QQLMLEDMVG LSSSPSKWEN SMPNSPVFGS YMQSSTEIQV  420
HQNVNQKLQG YSSNFSPSKV IGSSPFRVFN SELPSPITPL DVDPFTFSDW GSPDGKLDWT  480
IRVDENYDEP DVSWVNSLLK DATPMESGQY SVEEKVQYCQ NGTDAVSAVY MKQEQMVV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0064839.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019447011.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ93ZS91e-151C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLA0A1J7HSX20.0A0A1J7HSX2_LUPAN; Uncharacterized protein
STRINGGLYMA11G27130.10.0(Glycine max)
STRINGGLYMA14G37330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2397633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.11e-149salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]