PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0059359.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SRS
Protein Properties Length: 322aa    MW: 34676.1 Da    PI: 7.7755
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0059359.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702209.67.7e-651092473154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 
                       g++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerqqql+   +      +++ skr+r+  +    + ++++l+   s
  Lj0g3v0059359.1 109 GGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQQQLNPGFH------RTDISKRPRDIIT----SRNNQQLH---S 189
                      5789*************************************************998754......56899****9833....33333333...3 PP

           DUF702  97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++ le  ++P+ vss+a frcvrvs vdd+++ +aYqtav+igGhvfkGiLyd+G+++
  Lj0g3v0059359.1 190 SSGLEHGNFPALVSSPAEFRCVRVSCVDDADDRYAYQTAVNIGGHVFKGILYDYGPDN 247
                      35788999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.1E-62111246IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.3E-28113155IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-25198245IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAGLFSLGGG GGRGNQEGEH HGGEIPPPET LFWYKPNDDV SSYRGFELWN QHQQQQHQQQ  60
QEVVGGAGLR PLYSAVGVGS SSRVVVGSDD QRSSAAAVGF VRASSSGEGG GISCQDCGNQ  120
AKKDCPHMRC RTCCKSRGFD CQTHVKSTWV PAAKRRERQQ QLNPGFHRTD ISKRPRDIIT  180
SRNNQQLHSS SGLEHGNFPA LVSSPAEFRC VRVSCVDDAD DRYAYQTAVN IGGHVFKGIL  240
YDYGPDNNNN NTSHDNNMNV HNYMAGDTSP AALAGAQPLN LTAAVTVVSS SGALVDPSSL  300
YPSPVNAFMT GSGTQFFPRT RS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.139940.0protoplast
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In germinating seeds, first detected at about 48 h after imbibition. In young seedlings grown in continuous light, present in the root/shoot transition zone, in the apex, and in the apical region of the cotyledons. Later observed in lateral root primordia and in emerging lateral roots, particularly in the root tips, as well as in the shoot apex and in the new leaves, especially in the apical and lateral hydathodes. In adult plants, accumulates in lateral root tips, lateral root primordia, and axillary shoot primordia. In flowers, expressed in the style and stigmatic surface of the pistil and in the receptacle (base) of the flower throughout the development of the pistil until anthesis and later in the silique. Fades out after fertilization. {ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
UniprotTISSUE SPECIFICITY: Expressed in young organs such as shoot apices and root tips. Present in roots, stems, flowers, leaves, hydathodes and siliques. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0059359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156095.11e-127hypothetical protein PHAVU_003G258100g
SwissprotQ9XGX05e-73SHI_ARATH; Protein SHORT INTERNODES
TrEMBLV7CD601e-125V7CD60_PHAVU; Uncharacterized protein
STRINGXP_007156095.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-66Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]