PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0058889.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 326aa    MW: 35932.2 Da    PI: 8.0283
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0058889.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.5e-3297152359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      ++rY+eClkNhAa +Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+eve 
  Lj0g3v0058889.1  97 AIRYRECLKNHAAGMGGNATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEVEG 152
                      689*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2598153IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-2898150IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.3E-3199150IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.102100149IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-30245315IPR009057Homeodomain-like
SuperFamilySSF466896.14E-19245314IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-27253309IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEVSSSQEAG EIPIPIPIPI PINSSTNYGG GHAAGNGHDH HMNMHHIHDP APHHNHNHNN  60
IISPTSAAVP SNGSSMQLQA AAGLQQEDDG AYNKKVAIRY RECLKNHAAG MGGNATDGCG  120
EFMPSGEEGT IEALNCSACN CHRNFHRKEV EGEPPDYQHF NRLGLGGRKF ILGGHHHHHH  180
KNILTTPEAL GYHHHPTTAG NNNILPSRTI LPPHHMIMPY NIGSLLPSES DEQEDVAAGG  240
MVGRPAGQNQ IVKKRFRTKF TQEQKEKMLN FADKVGWKIQ KQEESAVQQF CQEIGVKRRV  300
LKVWMHNNKH NLAKKNNLPT TPSQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-242543111875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0058889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028762854.11e-116zinc-finger homeodomain protein 3-like
RefseqXP_028762855.11e-116zinc-finger homeodomain protein 3-like
TrEMBLA0A151SB961e-113A0A151SB96_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGGLYMA07G40190.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-65homeobox protein 31