PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0057839.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TALE

Protein Properties

Length: 627aa MW: 69767.6 Da PI: 6.208

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0057839.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	377	414	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yp+ +e+ LA+++gL+ +qV +WF N R + Lj0g3v0057839.1 377 FEHflNPYPKDSEKIMLARQTGLSRNQVANWFINARVR 414 665569******************************88 PP
2	BELL	124.1	5.4e-40	248	319	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq l kk+kLls+l+eVdkrY+qy++q+q+v+ssF++v g+g+a+pYt+lAl++iSrhFrcL+dai++qi Lj0g3v0057839.1 248 ERQHLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVSGCGAAEPYTALALRTISRHFRCLRDAISGQI 319 6889999****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.5E-54	166	317	IPR006563	POX domain
Pfam	PF07526	2.2E-49	173	316	IPR006563	POX domain
PROSITE profile	PS50071	12.746	355	418	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-27	357	431	IPR009057	Homeodomain-like
SMART	SM00389	2.0E-9	358	422	IPR001356	Homeobox domain
CDD	cd00086	1.37E-12	358	419	No hit	No description
SuperFamily	SSF46689	1.58E-17	359	425	IPR009057	Homeodomain-like
Pfam	PF05920	1.6E-17	375	414	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MYPNQAFSSG SYAEMLSGSS MLPHNYSESV GGQNELKFMA SMGDNMTIQP MEEHSNAGAG 60 DSHVISRTQL GLVDIEQQNV QGQGLSLSLG TVMQSVPSFQ YQYPGSGFTS LMSSQIPNLK 120 GTEDEANLHK ELRNAECMTP VSSGGFHKRE DFYNPHQSDP YLHGAAGFSA NNVMNSQYLK 180 VAQELLDEIV NVRKPLKPTG LEKQQSFRDI GLDGSKDSDG KSTSQSMQMS SGPNGSTANS 240 SCELSPAERQ HLLDKKTKLL SMLDEVDKRY RQYCHQMQIV VSSFDMVSGC GAAEPYTALA 300 LRTISRHFRC LRDAISGQIQ VTQRSLGEQE GIPRLRNVDQ KLRQQKALQQ LGVMRQAWRP 360 QRGLPENSVS ILRAWLFEHF LNPYPKDSEK IMLARQTGLS RNQVANWFIN ARVRLWKPMV 420 EEMYKEEFGD SEMSSSNLLS ENTPKASRED VQVSGNKREE SQDKLTTIDS LQQQGQIHGL 480 KLDHASSTAE LDRGIQSGDD HGTNVMDFRT GKLHGDQRFN MNNSPYSSAP MQITHNGDGC 540 IMASTPATYD LADLGNFSTV GGHVSLALEL RNSENNGFGV SNDDTYKRHD QTLASSQEND 600 MLEYHFTDSG KQQHKFGNPH LLHEFVV

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MYPNQAFSSG SYAEMLSGSS MLPHNYSESV GGQNELKFMA SMGDNMTIQP MEEHSNAGAG  60
DSHVISRTQL GLVDIEQQNV QGQGLSLSLG TVMQSVPSFQ YQYPGSGFTS LMSSQIPNLK  120
GTEDEANLHK ELRNAECMTP VSSGGFHKRE DFYNPHQSDP YLHGAAGFSA NNVMNSQYLK  180
VAQELLDEIV NVRKPLKPTG LEKQQSFRDI GLDGSKDSDG KSTSQSMQMS SGPNGSTANS  240
SCELSPAERQ HLLDKKTKLL SMLDEVDKRY RQYCHQMQIV VSSFDMVSGC GAAEPYTALA  300
LRTISRHFRC LRDAISGQIQ VTQRSLGEQE GIPRLRNVDQ KLRQQKALQQ LGVMRQAWRP  360
QRGLPENSVS ILRAWLFEHF LNPYPKDSEK IMLARQTGLS RNQVANWFIN ARVRLWKPMV  420
EEMYKEEFGD SEMSSSNLLS ENTPKASRED VQVSGNKREE SQDKLTTIDS LQQQGQIHGL  480
KLDHASSTAE LDRGIQSGDD HGTNVMDFRT GKLHGDQRFN MNNSPYSSAP MQITHNGDGC  540
IMASTPATYD LADLGNFSTV GGHVSLALEL RNSENNGFGV SNDDTYKRHD QTLASSQEND  600
MLEYHFTDSG KQQHKFGNPH LLHEFVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-14	364	421	1	58	Homeobox protein Meis1
4xrs_B	1e-14	364	421	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.25905	0.0	pod

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0057839.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT136990	0.0	BT136990.1 Lotus japonicus clone JCVI-FLLj-16H21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003589334.1	0.0	BEL1-like homeodomain protein 3
Refseq	XP_024631180.1	0.0	BEL1-like homeodomain protein 3
Swissprot	Q9FWS9	1e-110	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	A0A371GV08	0.0	A0A371GV08_MUCPR; BEL1-like homeodomain protein 7 (Fragment)
STRING	AES59585	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2146	31	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-101	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]