PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0057709.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 269aa    MW: 29592.8 Da    PI: 8.5541
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0057709.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.94.4e-41170246177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cqv+gC  dls+ak+yhr+h+vCe hsk+p+v+++gle+rfCqqCsrfh l efDe+krsCrrrL++hn+rrrk+ 
  Lj0g3v0057709.3 170 CCQVDGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPY 246
                      6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.3E-34164232IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.573168245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-39169250IPR004333Transcription factor, SBP-box
PfamPF031104.8E-32171244IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEWNSKSPSQ WDLEYLSFFN PKATENPKLQ PVNTSAEENQ EINAGMLDTS GGSGCSGSEL  60
IHASSSRSSK SNSISSSSNR DSKTSTFTFE SSSGKKELSK EEPVETSQAP EPSSVSGEPL  120
LTLKLGKRLY FEDGYPGSDS KNLSFSGAPI SSLNTGKKCK SNGQDIHYPC CQVDGCGLDL  180
SSAKDYHRKH RVCESHSKSP KVVIAGLERR FCQQCSRFHG LLEFDEKKRS CRRRLSDHNA  240
RRRKPYPQAV QLSQSALSSP HCGITLQTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-291712441184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226243KKRSCRRRLSDHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0057709.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229799.11e-134squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229800.11e-134squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229801.11e-134squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229802.11e-134squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229803.11e-134squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229805.11e-134squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_029129673.11e-134squamosa promoter-binding-like protein 12 isoform X1
SwissprotQ9S8408e-60SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A371HRU41e-130A0A371HRU4_MUCPR; Squamosa promoter-binding-like protein 12 (Fragment)
STRINGXP_007163771.11e-112(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-57squamosa promoter binding protein-like 2