PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0057709.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 444aa    MW: 49273.2 Da    PI: 7.1621
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0057709.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71e-40170246177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cqv+gC  dls+ak+yhr+h+vCe hsk+p+v+++gle+rfCqqCsrfh l efDe+krsCrrrL++hn+rrrk+ 
  Lj0g3v0057709.2 170 CCQVDGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPY 246
                      6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-33165232IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.573168245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-38169250IPR004333Transcription factor, SBP-box
PfamPF031101.1E-31171244IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEWNSKSPSQ WDLEYLSFFN PKATENPKLQ PVNTSAEENQ EINAGMLDTS GGSGCSGSEL  60
IHASSSRSSK SNSISSSSNR DSKTSTFTFE SSSGKKELSK EEPVETSQAP EPSSVSGEPL  120
LTLKLGKRLY FEDGYPGSDS KNLSFSGAPI SSLNTGKKCK SNGQDIHYPC CQVDGCGLDL  180
SSAKDYHRKH RVCESHSKSP KVVIAGLERR FCQQCSRFHG LLEFDEKKRS CRRRLSDHNA  240
RRRKPYPQAV QLSQSALSSP HCDGTQQMSP FAYSRTTTNV AWQNIHRSNV NHTKDLFMKP  300
AKASNEIPNI FSILSDDSNI CFASKGIATK NINPGIEDNI TSEANATQDF HSALSLLSTN  360
SWGSYETKPF SLEQPNHTTS NTQPMINAMS PRFPPASSEY WHADQQVNST AWISYSNSDD  420
SNRFHEFPLF RDTYESGFPY DQLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-281712441184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226243KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0057709.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229799.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229800.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229801.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229802.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229803.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020229805.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_029129673.10.0squamosa promoter-binding-like protein 12 isoform X1
TrEMBLA0A371HRU40.0A0A371HRU4_MUCPR; Squamosa promoter-binding-like protein 12 (Fragment)
STRINGXP_004504410.11e-172(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-63squamosa promoter binding protein-like 2