PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0057219.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TCP | ||||||||
Protein Properties | Length: 307aa MW: 32649 Da PI: 10.2389 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.8 | 2.8e-36 | 44 | 144 | 3 | 102 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++ti WLl+ a+pai+++tgt++ +a ++ +++ + + ++ss++++++ + Lj0g3v0057219.1 44 QKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHRSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVNGTLRIPTTSPSSNSKSPDPE 137 6899***********************************************************8888855542223333222233332222222 PP TCP 96 kskksqk 102 ++ +++k Lj0g3v0057219.1 138 PGDPNEK 144 2222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-30 | 48 | 136 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.001 | 49 | 103 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MAMEASRNID LRLGEPKEEP GTEEVAAEMS MSMSMQVNKA QTPQKRASTK DRHTKVEGRG 60 RRIRMPATCA ARIFQLTREL GHRSDGETIR WLLEHAEPAI IAATGTGTVP AIAMSVNGTL 120 RIPTTSPSSN SKSPDPEPGD PNEKKKRKRP GTGAADVSFG DGGGVSVSVS AGLTTSNPNP 180 TIPQQTVIPL PQNVVPVWAI PSNAVVPAGG AFFVVPPMAT AAPSNSNLQP QFFTIARPIS 240 AFVSSMVTPV QFQPASSSCS AAPPSRATVM APSTTTTTTT THTLRDFSLE IYDRQELQFM 300 SRSSSKH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 149 | EKKKRKRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.3117 | 0.0 | pod| protoplast| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00638 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0057219.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510891.1 | 1e-133 | transcription factor TCP9 | ||||
Swissprot | O64647 | 3e-77 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A1S2YW73 | 1e-131 | A0A1S2YW73_CICAR; transcription factor TCP9 | ||||
STRING | XP_004510891.1 | 1e-132 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-59 | TCP family protein |