PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0054379.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LSD
Protein Properties Length: 183aa    MW: 19686.6 Da    PI: 8.0421
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0054379.4genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.12.6e-12731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr++L YPrGA +V+Ca C+ +
  Lj0g3v0054379.4  7 CNGCRNILVYPRGAGNVCCAWCNVI 31
                     **********************986 PP

2zf-LSD144.82e-144670125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggCrtlL+Y  GA+sVRC++C+t+
  Lj0g3v0054379.4 46 CGGCRTLLMYANGATSVRCSCCNTI 70
                     ***********************97 PP

3zf-LSD138.81.6e-1284107124
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                      Cg+Crt L+YP GA sV+Ca+C+ 
  Lj0g3v0054379.4  84 CGNCRTALMYPHGALSVKCAICHY 107
                      **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.1E-11432IPR005735Zinc finger, LSD1-type
PfamPF069436.5E-10730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-144373IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-124670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.1E-1281110IPR005735Zinc finger, LSD1-type
PfamPF069433.8E-1284108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRCQLVCNGC RNILVYPRGA GNVCCAWCNV ITPVPPAGME MSQLYCGGCR TLLMYANGAT  60
SVRCSCCNTI TRVPESNQVS HIHCGNCRTA LMYPHGALSV KCAICHYITN VSMTNARFPI  120
LVQRSNGTTE SETTTSESEI ASSISSSRPH FESQTVVVEN PMSVDSNGKL VSNVVVGVAT  180
NQR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0054379.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1385860.0BT138586.1 Lotus japonicus clone JCVI-FLLj-5N10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488206.13e-91protein LSD1-like
RefseqXP_027189085.13e-91protein LSD1-like
SwissprotQ6ASS22e-60LOL3_ORYSJ; Protein LOL3
TrEMBLI3SDN91e-130I3SDN9_LOTJA; Uncharacterized protein
STRINGXP_004488206.11e-90(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.78e-58LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]