PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0054379.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LSD
Protein Properties Length: 170aa    MW: 18228.8 Da    PI: 7.8969
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0054379.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.22.3e-12731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr++L YPrGA +V+Ca C+ +
  Lj0g3v0054379.2  7 CNGCRNILVYPRGAGNVCCAWCNVI 31
                     **********************986 PP
2zf-LSD1451.8e-144670125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggCrtlL+Y  GA+sVRC++C+t+
  Lj0g3v0054379.2 46 CGGCRTLLMYANGATSVRCSCCNTI 70
                     ***********************97 PP
3zf-LSD138.91.4e-1284107124
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                      Cg+Crt L+YP GA sV+Ca+C+ 
  Lj0g3v0054379.2  84 CGNCRTALMYPHGALSVKCAICHY 107
                      **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.6E-11432IPR005735Zinc finger, LSD1-type
PfamPF069435.8E-10730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-144373IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-124670IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.30.40.105.6E-460113IPR013083Zinc finger, RING/FYVE/PHD-type
TIGRFAMsTIGR010532.9E-1281109IPR005735Zinc finger, LSD1-type
PfamPF069433.4E-1284108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MRCQLVCNGC RNILVYPRGA GNVCCAWCNV ITPVPPAGME MSQLYCGGCR TLLMYANGAT  60
SVRCSCCNTI TRVPESNQVS HIHCGNCRTA LMYPHGALSV KCAICHYITN RSNGTTESET  120
TTSESEIASS ISSSRPHFES QTVVVENPMS VDSNGKLVSN VVVGVATNQR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0054379.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1335680.0BT133568.1 Lotus japonicus clone JCVI-FLLj-13M22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488206.13e-84protein LSD1-like
RefseqXP_027189085.13e-84protein LSD1-like
SwissprotQ2QMB37e-59LOL2_ORYSJ; Protein LOL2
TrEMBLI3SDN91e-101I3SDN9_LOTJA; Uncharacterized protein
STRINGXP_004488206.11e-83(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-51LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]