PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0047359.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24734.2 Da    PI: 9.1139
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0047359.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.17.1e-211764249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +i  ks  qvtfskRr g++KKA+EL++LC++e+a+++fs+ +k + +
  Lj0g3v0047359.1 17 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSF 64
                     57789999*********************************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.17868IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-29867IPR002100Transcription factor, MADS-box
CDDcd002657.74E-32978No hitNo description
SuperFamilySSF554559.94E-27993IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-171030IPR002100Transcription factor, MADS-box
PfamPF003192.5E-231764IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSKKKSSLGR QKIPIEKIPK KSHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIVVFSPADK  60
AFSFGHPEVE SIIDRYLTRN PPQEPSGAHQ FVEAHRNANL RDLNMQLTQF LNHLEIEKKQ  120
GDEIDNVRRE RQRQFWWESP VDELGLHELI QLKGSVEELK DNLGKLATKF IMEQCNSNIS  180
SVNIGASGLG LYDASFENKY GATIPNAYNY LGFRQGNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-17894187MEF2C
5f28_B3e-17894187MEF2C
5f28_C3e-17894187MEF2C
5f28_D3e-17894187MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0047359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511261.11e-124agamous-like MADS-box protein AGL61
SwissprotQ9FKK24e-54AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A1S2YWY31e-123A0A1S2YWY3_CICAR; agamous-like MADS-box protein AGL61
STRINGXP_004511261.11e-123(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-56AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]