PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0043059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 530aa MW: 57754.2 Da PI: 6.7951 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.1e-30 | 344 | 402 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+H+h+ Lj0g3v0043059.1 344 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHKHP 402 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-33 | 328 | 404 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-27 | 336 | 404 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.425 | 338 | 404 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-36 | 343 | 403 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-26 | 345 | 402 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MARGGGLSID SDPIGSSFFH HKPIVLNSFP EDHKNNHNHN HNNNKKLSPN NMDNKVNNTA 60 NNNNSTATIP FQVNLSSSDE KRPIIDEMDF FSDNKNNNNN KDHHDTLVGS ASTSAPHDHS 120 TNPALLEFKV NTGLNLLTTN TSSDQSMVED DIPSNLEDKR AKMELVVLQA EIERVKVENH 180 RLRSMLEQVN TNYNELRVHL VSLMQGQKAG EEGGGDQQKQ VFDGKLEGER KQSGNGGGAL 240 VPRQFMDLGL ATNADVDEPS LSSSVGRSQE QSKSPANNVE VGSDEDKKEF SSAIIEREDS 300 PPNQGLTANS VPRFSPPGNV DQAEATMRKA RVSVRARSEA SMLTDGCQWR KYGQKMAKGN 360 PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTI LITTYEGNHK HPLPPAAMAM AQTTSSAARM 420 LLSGSMSSAD GLMNANFLTR TLLPCSSSMA TISASAPFPT VTLDLTHSPN PLQFPKNPTQ 480 FQIPFPGIPQ NLANSPASLL PQIFGYNQSK FSGLQMSQNA SSDPSQSQPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-22 | 330 | 406 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0043059.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019575 | 0.0 | EU019575.1 Glycine max WRKY36 (WRKY36) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020238224.1 | 0.0 | probable WRKY transcription factor 31 isoform X1 | ||||
Refseq | XP_020238225.1 | 0.0 | probable WRKY transcription factor 31 isoform X2 | ||||
Swissprot | Q9C519 | 1e-117 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | V7BZA4 | 0.0 | V7BZA4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149982.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-107 | WRKY family protein |