PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0031929.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 291aa    MW: 32587.7 Da    PI: 7.8761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0031929.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.8e-21149199255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAaka+++a+ kl+g
  Lj0g3v0031929.1 149 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDRAAFKLRG 199
                      69*******.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-31148207No hitNo description
SMARTSM003802.2E-38149213IPR001471AP2/ERF domain
PfamPF008479.0E-15149199IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23149209IPR016177DNA-binding domain
PROSITE profilePS5103224.263149207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32149207IPR001471AP2/ERF domain
PRINTSPR003671.5E-13150161IPR001471AP2/ERF domain
PRINTSPR003671.5E-13189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAYADEISAL KQIKLHLLGE LSPLPTPKNN QQPPQQQQQP WFQQFDEITT SNTSPTQSSS  60
SDSSSSSSNI SLDHYFDTQN QLPLFEFEFK PHPIDLQTPV APPQRLARKP SLQIALPKKT  120
TEWIQFGNPD PNPDPVVQAQ PEPAEKKQHY RGVRQRPWGK FAAEIRDPNK RGSRVWLGTF  180
DTAIEAAKAY DRAAFKLRGS KAILNFPLDV AAAAASGDGE SDRKRRREEE VVEVKAVVKR  240
EKTTESEVKE TPLTPSIWTG VWDSDVKGIF TVPPLSPLSP LPAFHSQLMM V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30146210266ATERF1
3gcc_A3e-30146210266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222226RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.15970.0cell culture| floral bud| flower| pod| protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0031929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096530.0AP009653.1 Lotus japonicus genomic DNA, clone: LjT33A04, TM0130, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335357.12e-95ethylene-responsive transcription factor 5
TrEMBLA0A2Z6LZ591e-99A0A2Z6LZ59_TRISU; Uncharacterized protein
STRINGXP_004508947.14e-88(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-47ethylene responsive element binding factor 5