PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0020039.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 330aa    MW: 36939.1 Da    PI: 6.831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0020039.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-164087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde l+  +++ G g+W+t +++ g+ R++k+c++rw +yl
  Lj0g3v0020039.1 40 RGPWTPEEDEVLASFIRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 87
                     89******************************99************97 PP
2Myb_DNA-binding45.81.4e-1498138648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Lj0g3v0020039.1  98 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNFWNTHL 138
                      89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-213189IPR009057Homeodomain-like
PROSITE profilePS5129415.8763587IPR017930Myb domain
SuperFamilySSF466895.14E-2837134IPR009057Homeodomain-like
SMARTSM007173.5E-123989IPR001005SANT/Myb domain
PfamPF002491.7E-144087IPR001005SANT/Myb domain
CDDcd001677.55E-104287No hitNo description
PROSITE profilePS5129423.85588142IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2490143IPR009057Homeodomain-like
SMARTSM007175.9E-1392140IPR001005SANT/Myb domain
PfamPF002492.1E-1398138IPR001005SANT/Myb domain
CDDcd001678.98E-1198138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MRNPIASSST NKKKSSTTTG NENGTTVTTT PCCSKVGLKR GPWTPEEDEV LASFIRKEGE  60
GRWRTLPKRA GLLRCGKSCR LRWMNYLRPS VKRGQIAPDE EDLILRLHRL LGNRWSLIAG  120
RIPGRTDNEI KNFWNTHLSK KLISQGIDPR THKPLNPELS IPSSSTTPPP PPPSKPLPVI  180
TNHQTLHETT THHHLNIASV NQECDEGQYQ YQQPQAVAAA AYMVANDIPD DDVPSMGHLL  240
ANNNNNQDYN DINYCSDDIF SSFLNSLINE DAFSAQRHLQ SEHHDDLAQD PVTSSTPQGY  300
NGIGVAWELP LMPANFSQNE HSHEVDDHHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24381425108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.112800.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0020039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368327.11e-124transcription repressor MYB5
SwissprotQ388508e-86MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A151RC881e-112A0A151RC88_CAJCA; Transcription repressor MYB5
STRINGGLYMA14G24500.21e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-79myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]