PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0017149.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 225aa MW: 25684.1 Da PI: 6.532

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0017149.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.2	6.4e-12	64	94	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k +rr+++NReAAr+sR+RKka++++Le Lj0g3v0017149.1 64 DKIQRRLAQNREAARKSRLRKKAYVQQLESS 94 6889************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-4	61	126	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.783	63	105	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.7E-9	65	98	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.71E-23	65	117	No hit	No description
SuperFamily	SSF57959	2.73E-7	65	104	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.0E-8	66	107	No hit	No description
PROSITE pattern	PS00036	0	68	83	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.1E-31	153	225	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSVYDPIHQI SMWGESFKSN GNLSAQIPLI DEADMKFDSQ SEDASFDILG TSNNYEQEAN 60 RPIDKIQRRL AQNREAARKS RLRKKAYVQQ LESSRLKLMQ LEQELDRARH QGMYIGGGGL 120 DSNNMGFAGC ANSGITTFEM EYGNWVEEQS RRITEMRGAL NAHIGDMELR ILVDGMMNHY 180 AEIFRMKSAA AKADVFYVMS GMWKTTAERF FLWIGGFRPS ELLKV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.16599	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0017149.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT138317	0.0	BT138317.1 Lotus japonicus clone JCVI-FLLj-21K17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027337983.1	1e-145	transcription factor TGA4-like isoform X1
Refseq	XP_027337984.1	1e-145	transcription factor TGA4-like isoform X1
Refseq	XP_027337985.1	1e-145	transcription factor TGA4-like isoform X1
Refseq	XP_027337988.1	1e-145	transcription factor TGA4-like isoform X3
Swissprot	Q39237	1e-101	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A1S3TKH8	1e-143	A0A1S3TKH8_VIGRR; transcription factor TGA4 isoform X2
TrEMBL	Q93XA2	1e-143	Q93XA2_PHAVU; TGA-type basic leucine zipper protein TGA1.1
STRING	XP_007163615.1	1e-144	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-104	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]