PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0013729.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 310aa    MW: 33043.4 Da    PI: 8.6817
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0013729.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.11e-2991149259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+ kg+++pr+YYrCt    Cpv+k+v+r+aed +v+++tYeg+Hnh+
  Lj0g3v0013729.1  91 PDGCQWRKYGQKMAKGNPCPRAYYRCTIGtACPVRKQVQRCAEDRSVLVTTYEGQHNHQ 149
                      59**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-3275151IPR003657WRKY domain
SuperFamilySSF1182903.4E-2783151IPR003657WRKY domain
PROSITE profilePS5081128.41585151IPR003657WRKY domain
SMARTSM007742.4E-3490150IPR003657WRKY domain
PfamPF031061.6E-2592149IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKLMQKQQTN DEGKRDGVIP RPFLDIVGFA EKEHEPSQKI AGTSGDIVQL DTNEIKKLSS  60
ARDVDQTSET VSMIKKARVS VRARSESSMI PDGCQWRKYG QKMAKGNPCP RAYYRCTIGT  120
ACPVRKQVQR CAEDRSVLVT TYEGQHNHQL PPTAKAMAST TSAAASMLLS GAMPSADGII  180
NPTILESASL SCSQNVATLS ASAPFPTITL DLTQSSTSSS QLQGSLQSQL NLLPPLLAQK  240
FMSAPNTFGH KLHHLQGIET SSSLADTVNA AAVAITADPK FTATLVAAIT SIIGNSHSNN  300
CGTSRDPAVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2277152175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0013729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027941581.11e-128WRKY transcription factor 6-like
SwissprotQ9XEC35e-77WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A4D6MNN81e-127A0A4D6MNN8_VIGUN; WRKY transcription factor 33
STRINGGLYMA08G43258.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.15e-54WRKY family protein