PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.2779s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 317aa    MW: 34438.4 Da    PI: 7.4332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.2779s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20150199255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ kl+g
  Kalax.2779s0001.1.p 150 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDQAAHKLRG 199
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.32E-31149208No hitNo description
SuperFamilySSF541711.57E-22150208IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-32150208IPR001471AP2/ERF domain
PROSITE profilePS5103222.866150207IPR001471AP2/ERF domain
SMARTSM003803.4E-34150215IPR001471AP2/ERF domain
PfamPF008475.6E-14151199IPR001471AP2/ERF domain
PRINTSPR003675.2E-11151162IPR001471AP2/ERF domain
PRINTSPR003675.2E-11173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAAATDFYSG GGSVFPDLFQ GEAFDTFINS PSPCSSSSSF NSSFGYQLPS VSSSHTGFYT  60
PFQLCSAEQS FYGGFTQPES IGLNSLTSAQ IRQIQSQLHL QQISTAPAAS PAKQARTFTP  120
SCGDRSFALL CPKPAPMKLA AAPLPRQTKL YRGVRQRHWG KWVAEIRLPR NRTRLWLGTF  180
DTAEDAALAY DQAAHKLRGG AARLNFPDFH CRPRSALHAS VDAKVDAICN TLDQKPTPKN  240
RKSAAANKDV KTETPASPSV SSSSPALNQV WDELQTTSSP ESGISYLDFA EVEWDECDNK  300
LSLEKFPSVE IDWAAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20149207160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-20149207463ATERF1
3gcc_A5e-20149207463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019177314.13e-68PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotO656656e-58ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA9PL894e-65A9PL89_POPTR; RAP2.4-like protein
TrEMBLB9H5444e-64B9H544_POPTR; ERF family protein
STRINGPOPTR_0005s07900.16e-65(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-40ERF family protein