PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.2672s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 27313.2 Da PI: 9.5737 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 34 | 84 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d + +r r +lg+++t+eeAa+a+++a+++l+ge Kalax.2672s0001.1.p 34 RFVGVRQRP-SGRWVAEIKDSC---QRVRLWLGTYDTPEEAARAYDEAARALRGE 84 589******.7*********42...35**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.6E-28 | 34 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-15 | 34 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.336 | 34 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.13E-30 | 34 | 93 | No hit | No description |
SMART | SM00380 | 5.4E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-20 | 35 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MASCDSTKSR LTGAGGGGAR QQMAMGKAAV VGRRFVGVRQ RPSGRWVAEI KDSCQRVRLW 60 LGTYDTPEEA ARAYDEAARA LRGENARTNY PYSKRPCGSS VNSFGNGDGN HELSCSSLKA 120 KLSKSLQSVM GRSSESSKSS KNRVSDPLTF ASVFHLRGNG GPHEYRHMND TIDKAVQPSI 180 VVPSHEVNQS SSWDSSSLSD SSPDRVTVQK VFQYGKTDMS EPDHELGQHA VGQLAGRVYW 240 EHGQFKKEEV * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 34 | 92 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027109186.1 | 1e-63 | ethylene-responsive transcription factor ERF042-like | ||||
Refseq | XP_027158419.1 | 1e-63 | ethylene-responsive transcription factor ERF042-like | ||||
TrEMBL | A0A2G9HFD5 | 6e-69 | A0A2G9HFD5_9LAMI; Uncharacterized protein | ||||
STRING | XP_009598443.1 | 1e-60 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-10 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.2672s0001.1.p |