PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.2579s0001.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YA | ||||||||
Protein Properties | Length: 181aa MW: 20035.7 Da PI: 10.4708 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.5 | 3e-30 | 39 | 95 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RR Rak+e kk +++rkpy+heSRh hA+rRpRg+gGrF Kalax.2579s0001.2.p 39 DGPIYVNAKQYHGIIRRRLYRAKAELVKKS-IRARKPYMHESRHLHAMRRPRGCGGRF 95 57************************9999.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-33 | 37 | 98 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.655 | 38 | 98 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.8E-27 | 41 | 95 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.8E-23 | 41 | 63 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 43 | 63 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.8E-23 | 72 | 95 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MVYSKYPYGD QSYSVMSTYG PQVAVQGRVM LPLDMTSDDG PIYVNAKQYH GIIRRRLYRA 60 KAELVKKSIR ARKPYMHESR HLHAMRRPRG CGGRFLNTKI SDAGMGGNSM KSTSNGLLTQ 120 PTGSPSSGIF QSDSGTLNSP KQSNSDMSHI SGSEATSMYT RGDLRRFTTN FLSHSLPAVM 180 D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 3e-18 | 39 | 96 | 2 | 60 | HAPB protein |
4g92_A | 3e-18 | 39 | 96 | 2 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022747632.1 | 1e-74 | nuclear transcription factor Y subunit A-10-like isoform X2 | ||||
Swissprot | Q8LFU0 | 5e-45 | NFYAA_ARATH; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A2R6QVS9 | 1e-73 | A0A2R6QVS9_ACTCH; Nuclear transcription factor Y subunit A-10 like | ||||
STRING | VIT_08s0032g01190.t01 | 1e-69 | (Vitis vinifera) | ||||
STRING | XP_008350234.1 | 9e-71 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 2e-47 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.2579s0001.2.p |
Publications ? help Back to Top | |||
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