PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.2579s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YA | ||||||||
Protein Properties | Length: 224aa MW: 24446.4 Da PI: 10.4671 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 95.9 | 4.4e-30 | 85 | 141 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RR Rak+e kk +++rkpy+heSRh hA+rRpRg+gGrF Kalax.2579s0001.1.p 85 DGPIYVNAKQYHGIIRRRLYRAKAELVKKS-IRARKPYMHESRHLHAMRRPRGCGGRF 141 57************************9999.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-33 | 83 | 144 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.655 | 84 | 144 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.4E-23 | 87 | 109 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.7E-27 | 87 | 141 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 89 | 109 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.4E-23 | 118 | 141 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
GAGKGGSTQF TISTGGERNQ HVRASITVQP TLPDYQSHLE SGFGQAMVYS KYPYGDQSYS 60 VMSTYGPQVA VQGRVMLPLD MTSDDGPIYV NAKQYHGIIR RRLYRAKAEL VKKSIRARKP 120 YMHESRHLHA MRRPRGCGGR FLNTKISDAG MGGNSMKSTS NGLLTQPTGS PSSGIFQSDS 180 GTLNSPKQSN SDMSHISGSE ATSMYTRGDL RRFTTNFLSH SLPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 9e-18 | 85 | 142 | 2 | 60 | HAPB protein |
4g92_A | 9e-18 | 85 | 142 | 2 | 60 | HAPB protein |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002263793.1 | 4e-85 | PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 | ||||
Refseq | XP_019076993.1 | 4e-85 | PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 | ||||
TrEMBL | F6I3K7 | 8e-84 | F6I3K7_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0032g01190.t01 | 1e-84 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 3e-51 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.2579s0001.1.p |