PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.2449s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Dof | ||||||||
Protein Properties | Length: 245aa MW: 26000.4 Da PI: 7.8868 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 60.8 | 2.6e-19 | 1 | 32 | 31 | 62 |
zf-Dof 31 yfCkaCrryWtkGGalrnvPvGggrrknkkss 62 yfCk+CrryWt+GG+lrn+PvGgg+rknk+s Kalax.2449s0001.1.p 1 YFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSP 32 9****************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.1E-13 | 1 | 30 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 16.358 | 1 | 30 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-11 | 1 | 30 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
YFCKGCRRYW TEGGSLRNIP VGGGSRKNKR SPSSTSSAPP GVAAKKLFVH PSSLQNPNTM 60 IHQPERAGHD LNLSFPNHHQ DYRSMSDFVH LPNISSQTSA TTTATSHLSA LELLTGMTSR 120 GGVGGGFSNA FMPISDPDSV YSSTSFSNFM HDFKPPTLNF SLDNGLGIGQ SGSAGFTHSD 180 QISTSGGGGG GRVLVSPFDD LKNQHQADDH HHQHQQQAEQ NRGHGVVSTG YWTGMLGGGS 240 GSDW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002262703.1 | 7e-50 | PREDICTED: dof zinc finger protein DOF4.6 | ||||
TrEMBL | F6HU58 | 2e-48 | F6HU58_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0025g02250.t01 | 3e-49 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 2e-25 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.2449s0001.1.p |