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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Kalax.2314s0001.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family | bHLH | ||||||||
| Protein Properties | Length: 182aa MW: 20261.9 Da PI: 10.3579 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 44.5 | 2.9e-14 | 1 | 44 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
++Er+RR+++N++f+ L + +P + kK++Ka++L++A++Y+k+Lq
Kalax.2314s0001.1.p 1 MAERNRREKLNQRFNALSSAIPGL-----KKMDKATVLQEATKYVKQLQ 44
58**********************.....9******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 1.31E-11 | 1 | 48 | No hit | No description |
| SMART | SM00353 | 8.8E-14 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 6.7E-12 | 1 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.16E-16 | 1 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 15.929 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 9.4E-18 | 1 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 182 aa Download sequence Send to blast |
MAERNRREKL NQRFNALSSA IPGLKKMDKA TVLQEATKYV KQLQERIKTL EKQTKSITMM 60 ESAVFVKKSL LVINDINKSG FSNETSFNEK TLSDESLPVI KVRFCEKKVL IRVHCDRKKG 120 ASAEKILGEI AKLHLTVVNS NVLAFGSSAL DVTVLAKMNP ECSMAEKELV KTLCVALKSF 180 I* |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002518295.3 | 2e-60 | transcription factor bHLH25 | ||||
| Swissprot | Q9T072 | 4e-46 | BH025_ARATH; Transcription factor bHLH25 | ||||
| TrEMBL | B9RX26 | 5e-59 | B9RX26_RICCO; DNA binding protein, putative | ||||
| STRING | XP_002518295.1 | 8e-60 | (Ricinus communis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37850.1 | 1e-48 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Kalax.2314s0001.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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