PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.2010s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 291aa    MW: 31757.1 Da    PI: 8.4524
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.2010s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163152223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C++Cgk F ++ +L  H+r H
  Kalax.2010s0001.1.p 31 SCKICGKAFLTNRQLCGHMRHH 52
                         7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.733052IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9073057IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-73182No hitNo description
Gene3DG3DSA:3.30.160.601.0E-43157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0376082IPR007087Zinc finger, C2H2
SMARTSM003550.176082IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-56184IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
PfamPF139122.3E-4201226IPR007087Zinc finger, C2H2
SMARTSM003551.8201224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785201229IPR007087Zinc finger, C2H2
PROSITE patternPS000280203224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKAAYGLRQN PKKSLRFSGS GSGSVPDQKM SCKICGKAFL TNRQLCGHMR HHTPGERQGI  60
RCHQCAKNFG SIRALCGHMK SHRALDCTAF LTANGIRKRS RTPRFEVPRT HFDDSAVEDV  120
AISLILLSEG LEFRVSENPG KVELVDSLKS NGSNEPLADL GTDDAKCLNA ELDESVTVEP  180
LSTEVRCDDA MPSASCSKAK YSCLNCNRDF SSHQALGGHR SSRHKSRRCP SALKTETYHA  240
DHTPVAEPTP HDVQMDGLCL VGVTNFELLK RCNSVDVVPG ASRCYGLLRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-06C2H2-like zinc finger protein