PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1988s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 314aa    MW: 34198.6 Da    PI: 5.5468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1988s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-20157207255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+++g  +r++lg+f+ta +Aaka+++a+ kl+g
  Kalax.1988s0002.1.p 157 HYRGVRRRP-WGKFAAEIRDPNKRG--ARVWLGTFDTAIDAAKAYDRAAFKLRG 207
                          7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-32156216IPR001471AP2/ERF domain
CDDcd000181.35E-29157215No hitNo description
PROSITE profilePS5103224.474157215IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22157217IPR016177DNA-binding domain
PfamPF008476.0E-14157207IPR001471AP2/ERF domain
SMARTSM003808.0E-37157221IPR001471AP2/ERF domain
PRINTSPR003671.8E-13158169IPR001471AP2/ERF domain
PRINTSPR003671.8E-13197217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MATPSEVSTL EQIKQHLFGG LLSPLNLKSF GSGSDSSESV VTTSTDSPVS FSNYGAFSKL  60
ESCNSFEFDQ LPNKFFSFET KFDATGFDFA PEAEVIDLVE TSMKKPQIRT SKLSRKPSLN  120
ISLPDKTEWL DLTQSRAAPS AAVASKPEKA VAGDERHYRG VRRRPWGKFA AEIRDPNKRG  180
ARVWLGTFDT AIDAAKAYDR AAFKLRGSKA ILNFPLEIAA SCSAGDAAGV VDCGRKRRIR  240
DEEVEAEVKK VKAEEGVAEE GVAEETVAKP LTPTSWTAFW DFDETEMRGI FNVPPLSPLS  300
PHPALGLAQL MVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-30156218466ATERF1
3gcc_A2e-30156218466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070058.12e-70ethylene-responsive transcription factor 5
TrEMBLA0A067L5Z54e-69A0A067L5Z5_JATCU; Uncharacterized protein
STRINGXP_010275423.11e-68(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-41ethylene responsive element binding factor 5