PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1735s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 267aa MW: 28414.6 Da PI: 4.8593 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.3e-06 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk+Fs+ L H+r H Kalax.1735s0002.1.p 141 HECGICGKVFSTGQALGGHMRAH 163 78*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.61E-6 | 138 | 165 | No hit | No description |
Pfam | PF13912 | 1.8E-11 | 140 | 164 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.8E-4 | 141 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.554 | 141 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 143 | 163 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MEGRNASRGS PSNVSEDHKR DGEDSSDRRG NNQERSSSDS SRHGGERRLN VDEIVITMIT 60 LVAIATSGNV VVHDQSWMTA AIVQSESFIP PPPPPAPAPA PTRVINNNAN NDAIPPPEEG 120 CSSGQSPPNK KRKRAEHQEV HECGICGKVF STGQALGGHM RAHYPGHLSR TRHANSNVAI 180 ASSAASVAAP SSYSGATINN NNNNINSEVD AEVNDESTVV EHAASESDQA ASHPRLDIDL 240 NVKPAEMSEE PEEENLEEEG HHSYGD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-08 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1735s0002.1.p |