PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1655s0002.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 407aa    MW: 44130.5 Da    PI: 7.4112
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1655s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.3e-06344439
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         r+C+ ++e++   +C++++ +lC +C  + H+       H++
  Kalax.1655s0002.2.p  3 RTCDFCGEQRSMVYCRSDSACLCLSCDRNVHSAnalsnrHSR 44
                         79*****************************65677777765 PP
2zf-B_box25.33.1e-084689441
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           C+++ +++++  C+d +  lC++C  ++H +      H++++
  Kalax.1655s0002.2.p 46 LLCERCTSQPAIVRCHDENASLCQNCDWSGHGNasaastHKRQT 89
                         57*****************************6689999999876 PP
3CCT64.72.7e-22349392144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeK+k+RkF+KkirY+sRK++A+ R+RvKGrFvk+ 
  Kalax.1655s0002.2.p 349 RDNAVKRYKEKKKNRKFDKKIRYASRKERADVRKRVKGRFVKAG 392
                          899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
CDDcd000219.77E-8347No hitNo description
PROSITE profilePS501199.3574390IPR000315B-box-type zinc finger
CDDcd000217.57E-64790No hitNo description
SMARTSM003360.334890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.388349391IPR010402CCT domain
PfamPF062034.4E-17349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGRTCDFCGE QRSMVYCRSD SACLCLSCDR NVHSANALSN RHSRTLLCER CTSQPAIVRC  60
HDENASLCQN CDWSGHGNAS AASTHKRQTI NCYSGCPSAA ELSRIWSFVL DIASAGDLDS  120
KTGAGSVAET CAGSANLEKK SITSLPEASQ IIELESKSAV LMPSSAMGAP KSTTLLKELP  180
SPPKQCCSIT EDIQSFDVDD NLFGDFSMAD VDLSIENYEE LFGYSQNFSE HLFENGGMAS  240
LFPKRIIPEV GTSTQGAKGA KGPAAVRTNT MQPSCSNPMS VDSLVSCKTD PIVYPARKDN  300
SGVTLSFSGM TNESSNGEYQ DCGISPVVAM GEPPWCPSGT ENSLTSASRD NAVKRYKEKK  360
KNRKFDKKIR YASRKERADV RKRVKGRFVK AGERYDYDPL CPTRSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245014.11e-155PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-130COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A1U7Z2X71e-154A0A1U7Z2X7_NELNU; zinc finger protein CONSTANS-LIKE 9
STRINGXP_010245014.11e-155(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-119B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]