PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1624s0002.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 31488.6 Da PI: 4.1694 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.1 | 2.9e-15 | 33 | 85 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+++GV ++ +grW+A+I + +k+ +lg++ t eeAa+a+++a+ +++g+ Kalax.1624s0002.2.p 33 SKFRGVAKHHHNGRWEARIGRVLG---NKYLYLGTYSTQEEAAAAYDRAAIQYRGA 85 79****************988422...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.91E-16 | 33 | 94 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-17 | 33 | 94 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-10 | 33 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.24 | 34 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-26 | 34 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-18 | 34 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MYRKEMEEMQ KLSREEYLAT LRRRSSGFSR GVSKFRGVAK HHHNGRWEAR IGRVLGNKYL 60 YLGTYSTQEE AAAAYDRAAI QYRGANAVTN FDVSNYADLL IKKDLAEEAG NEEQVVADEQ 120 PQPLNLKAET DAQCQENKKG IDVIDHLPKC EEAFDPYAST TDQVSVEDHG MMNEHDFSWD 180 LNLDPDFSEL PMPNLSDIAE SCCELQCELP ALFDDYTGFE DNLDFMFTSG LEENMFDLGD 240 GEKGNGASTS LPIMTSSTSS SSISCLSTSP SNSYSYDDYL V* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027158350.1 | 1e-64 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A068V5Q4 | 6e-61 | A0A068V5Q4_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_029667m | 3e-58 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.2 | 2e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1624s0002.2.p |