PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1623s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 803aa    MW: 88228.8 Da    PI: 7.9159
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1623s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.69.9e-23167268199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g  W++++iyr++++r++lt+GW+ Fv++++L  gD v+F  
  Kalax.1623s0001.1.p 167 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVGWRFRHIYRGQPRRHLLTTGWSLFVSQKNLGLGDAVLFL- 254
                          99****************************963.3445679************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + +++el+++++r+
  Kalax.1623s0001.1.p 255 -RGENGELRLGIRRA 268
                          .4499999****996 PP
2Auxin_resp105.18.3e-35294375182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +a+a+ tk++F+v+Y+Pra++++Fv++++k++k++ +++  G+Rf m++e++ds+err+sG+v+g+ dldp+rWpnSkWr+L
  Kalax.1623s0001.1.p 294 VASAILTKNIFHVFYSPRATHADFVIPIQKYMKSIINPIPTGTRFVMRLEMDDSPERRCSGIVTGLGDLDPYRWPNSKWRCL 375
                          678999***************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-39160273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-42161273IPR015300DNA-binding pseudobarrel domain
CDDcd100178.79E-22165267No hitNo description
SMARTSM010196.3E-23167269IPR003340B3 DNA binding domain
PfamPF023624.8E-21167268IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619167269IPR003340B3 DNA binding domain
PfamPF065074.1E-29295375IPR010525Auxin response factor
PROSITE profilePS5174518.534666748IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MELDGHHAVR VEERKNAYVS CDGDCGDKAG CARCLSSSSS SSSSSNSPAS LASSSIYVEL  60
WHACAGPITA LPKKGNVVVY FPQGHLEQLA SNSPFSPTEM PTYDLQPQIF CRVVNVQRLA  120
NKENDEVYTQ LSLLPQPELV GSSLSRSDLL SANGNDEPAL KSTPHMFCKT LTASDTSTHG  180
GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGVGWRFR HIYRGQPRRH LLTTGWSLFV  240
SQKNLGLGDA VLFLRGENGE LRLGIRRAVR PRNCLPADSS IGNHSSLPTV LSSVASAILT  300
KNIFHVFYSP RATHADFVIP IQKYMKSIIN PIPTGTRFVM RLEMDDSPER RCSGIVTGLG  360
DLDPYRWPNS KWRCLMVRWD EGHATNHQER VSPWEVDASI CLPSPLSFHG SPQLKKLRTC  420
LQSSLQSGIA DDISTAGRSG FLDFEETIRS SSKVLQGQEN SGLPSPLYRG DKVNHPLGCC  480
SEVPYLVNQL LPPPRPDHVT VPERLNIQTT GYTTLGKSDV FPTVLQGQEV CPYSAWRKSS  540
IGCNMFSTHQ RPKPSFYPVG SAGSRSVYFP PHSRIQKEMQ GTAMSISARF TGGSGSFSRP  600
WVHNGMNIDE AQLTAQKLPE DASLPCSLEM NTKDGRNETA SVTPTGCRLF GISLTADTST  660
QNASKRSCTK VHKQGSMVGR AIDLSKLNGY TDLLFELEWL FGMEGLLRDP QKGWRILYTD  720
SQNNMMAVGE DPWHEFCEMV SKIHIYTKED VEKLSIGVTS DETQSCLEEA PGGAGVLKSS  780
SAGHPDSSPT KKKGYRVLLL SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-118393972353Auxin response factor 1
4ldy_B1e-118393972353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279163.10.0LOW QUALITY PROTEIN: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A061GT760.0A0A061GT76_THECC; Auxin response factor
STRINGEOY330600.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]