PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1612s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 231aa MW: 25559.8 Da PI: 10.4644

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1612s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.4	3.2e-33	14	68	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLH++Fv+av++LGG+ekAtPk++++lm++kgLtl+h+kSHLQkYR+ Kalax.1612s0003.1.p 14 KPRLRWTPELHSCFVDAVAKLGGPEKATPKAVMRLMGLKGLTLYHLKSHLQKYRI 68 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.427	11	71	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	12	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-16	13	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-23	14	69	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	16	67	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-16	115	154	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MERGYVGGKA AEPKPRLRWT PELHSCFVDA VAKLGGPEKA TPKAVMRLMG LKGLTLYHLK 60 SHLQKYRIGQ QARKSSSEQS KDSSGDSRKM QASGATATSS GACSGQGDAA LIYAARSQTQ 120 AQNRLHDQLQ VQRRLQMRIE AQGKYLQSVL EKARTNLTLR TGSSPAASSD QARAQQLTGF 180 NLALEDDVNG VQKDTEANFR SKDFFQSFLQ NQRREMQEDE KPDVKQLRLF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-20	14	70	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	14	70	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	14	70	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	14	70	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002264257.2	1e-63	PREDICTED: myb family transcription factor PHL11
Swissprot	Q94A57	3e-54	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	D7U3R9	2e-62	D7U3R9_VITVI; Uncharacterized protein
STRING	VIT_02s0033g00300.t01	4e-63	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	9e-48	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.1612s0003.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]