PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1526s0002.4.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 364aa MW: 40758.2 Da PI: 5.954

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1526s0002.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.2	3.1e-12	76	113	3	40
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 +k++rr+++NReAAr+sR+RKka++++Le +L + Kalax.1526s0002.4.p 76 NDKVQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIQ 113 79****************************86555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.1E-9	73	123	No hit	No description
SMART	SM00338	6.2E-7	74	134	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-8	76	107	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.025	76	118	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.33E-8	78	121	No hit	No description
CDD	cd14708	2.07E-22	78	130	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-29	167	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MHSPSTHFVP PRRMGLYDPV HPISMWGETF KGNGFQFTSG ATILEVESKL DNQSEDTSHD 60 TLGPVNNYDE EGSKPNDKVQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LIQLEQELDR 120 TRQQGMYLGG GLDAAHLGFS GAVNSGIAGF ELEYGQWVEE QNREITILRA ALEANIGDAE 180 LKVLVDGSMS HYSELFRIKA AAAKADVFYL MSGMWKTTAE RFFLWIGGFR PSELLKQILV 240 PQIDPLSEQQ LLDVCNLKRS CQQAEDALSQ GMDKLQQIVA DTIATGELGD GRYIPQMSSA 300 MEKLEALVSF VNQADHLREE TLQQMSCNLT IRQSARGLLA LGEYFQRLRA LSSLWTTRPR 360 EAA*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MHSPSTHFVP PRRMGLYDPV HPISMWGETF KGNGFQFTSG ATILEVESKL DNQSEDTSHD  60
TLGPVNNYDE EGSKPNDKVQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LIQLEQELDR  120
TRQQGMYLGG GLDAAHLGFS GAVNSGIAGF ELEYGQWVEE QNREITILRA ALEANIGDAE  180
LKVLVDGSMS HYSELFRIKA AAAKADVFYL MSGMWKTTAE RFFLWIGGFR PSELLKQILV  240
PQIDPLSEQQ LLDVCNLKRS CQQAEDALSQ GMDKLQQIVA DTIATGELGD GRYIPQMSSA  300
MEKLEALVSF VNQADHLREE TLQQMSCNLT IRQSARGLLA LGEYFQRLRA LSSLWTTRPR  360
EAA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010652849.1	0.0	PREDICTED: transcription factor TGA1 isoform X3
Swissprot	Q39237	0.0	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A061DI74	0.0	A0A061DI74_THECC; BZIP transcription factor family protein isoform 1
STRING	EOX92234	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.1526s0002.4.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]