PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1508s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 268aa    MW: 29531.9 Da    PI: 8.4458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1508s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18102151255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + + +r++lg++ tae Aa a+++a+++++g
  Kalax.1508s0005.1.p 102 HYRGVRQRP-WGKFAAEIRDP---N-KaARVWLGTYSTAEAAALAYDEAALRFKG 151
                          7********.**********9...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.4E-32101160IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21102160IPR016177DNA-binding domain
CDDcd000182.84E-19102160No hitNo description
PROSITE profilePS5103223.696102159IPR001471AP2/ERF domain
PfamPF008475.3E-13102151IPR001471AP2/ERF domain
SMARTSM003801.5E-36102165IPR001471AP2/ERF domain
PRINTSPR003673.4E-10103114IPR001471AP2/ERF domain
PRINTSPR003673.4E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGKSNFVTWL CQGLKSLSRL DSRHGKRPFQ SDEEEKKEEM SGDEELFPMY STRSQQDMCV  60
MVSALSRVIG NSSDDSTSLA LPLPMPPPPD FATGSPSLLR RHYRGVRQRP WGKFAAEIRD  120
PNKAARVWLG TYSTAEAAAL AYDEAALRFK GSKAKLNFPE RVEYVHQMTP QLLSPSQPSS  180
LHPLQRNPHS YDVLGSNPDS NIRMKPSAAT TTQSWSPTTM SFSSVSSSSS SSSSLQEPNQ  240
PTCPSMSHYG GPGATSWSYN DNQPEYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-27101162163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00495DAPTransfer from AT5G07310Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549660.11e-54PREDICTED: ethylene-responsive transcription factor ERF114-like, partial
SwissprotQ9FH542e-47EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1U8F1Z13e-53A0A1U8F1Z1_CAPAN; ethylene-responsive transcription factor ERF114-like
TrEMBLA0A2G3B3985e-53A0A2G3B398_CAPCH; Ethylene-responsive transcription factor
STRINGXP_008356833.16e-48(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.19e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]