PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1507s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 420aa MW: 45475.6 Da PI: 8.0009

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1507s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	229	284	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Kalax.1507s0001.1.p 229 KQRRCWSPELHRRFIHALQQLGGPHVATPKQIKELMKVDGLTNDEVKSHLQKYRLH 284 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-28	226	287	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-18	226	287	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.314	226	286	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.4E-27	229	284	IPR006447	Myb domain, plants
Pfam	PF00249	7.0E-8	231	282	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MRRTHLAYNQ STAPALDPAP ARKDRVLWSF YDLGVMDYAD KMQKCSEYVE ALEVERRKIQ 60 VFQRELPLCL ELVSQAIDAC RQQLSSASPP HAAAVGASHE CFHVRQQSEC SEQTSSHGPV 120 LEEFIPIKRA ASCSSEDVGD EEEDESGEKS GDKSGKKSDW LRSVQLWNQS PDPAPVCEVK 180 KNGGAFRPFS KEKAVVVAEM VDKPASSTTL KSRKEESAKE KESGQTQRKQ RRCWSPELHR 240 RFIHALQQLG GPHVATPKQI KELMKVDGLT NDEVKSHLQK YRLHMRRPSA TMASNANAQG 300 PQFVVVGGIW VPPPEYAAPA MTPAATTSSG DPPEADNGKR EARTPSNGVY APVATVGTPF 360 ARPASRTQNS NQKVQSGSHC EDDNGSHSAH GGARAHSGSP ASSSSTHTTA TATASPASS*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MRRTHLAYNQ STAPALDPAP ARKDRVLWSF YDLGVMDYAD KMQKCSEYVE ALEVERRKIQ  60
VFQRELPLCL ELVSQAIDAC RQQLSSASPP HAAAVGASHE CFHVRQQSEC SEQTSSHGPV  120
LEEFIPIKRA ASCSSEDVGD EEEDESGEKS GDKSGKKSDW LRSVQLWNQS PDPAPVCEVK  180
KNGGAFRPFS KEKAVVVAEM VDKPASSTTL KSRKEESAKE KESGQTQRKQ RRCWSPELHR  240
RFIHALQQLG GPHVATPKQI KELMKVDGLT NDEVKSHLQK YRLHMRRPSA TMASNANAQG  300
PQFVVVGGIW VPPPEYAAPA MTPAATTSSG DPPEADNGKR EARTPSNGVY APVATVGTPF  360
ARPASRTQNS NQKVQSGSHC EDDNGSHSAH GGARAHSGSP ASSSSTHTTA TATASPASS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003631224.1	1e-129	PREDICTED: myb family transcription factor EFM
Swissprot	Q9FPE8	1e-101	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A438ECN5	1e-128	A0A438ECN5_VITVI; Transcription factor HHO3
STRING	XP_010695844.1	1e-125	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	5e-91	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.1507s0001.1.p

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]