PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1493s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 271aa MW: 29324.8 Da PI: 7.0404 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.1 | 7.9e-16 | 217 | 251 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C nCgt + Tp++Rrgp g++tLCnaCGl+++ k Kalax.1493s0002.1.p 217 CKNCGTGSkhTPMMRRGPAGPRTLCNACGLKWANK 251 ******9999**********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 2.1E-12 | 79 | 114 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.439 | 79 | 114 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.2E-14 | 83 | 113 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.2E-16 | 146 | 188 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.344 | 146 | 188 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 3.14E-9 | 211 | 253 | No hit | No description |
SMART | SM00401 | 6.0E-9 | 211 | 268 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.1E-13 | 215 | 251 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.21E-11 | 216 | 251 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 217 | 244 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.9E-13 | 217 | 251 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MSSDYSNESI NMQTLMENAD EDAFVDGEQF ADSGVAGQFE HHLVGDDGVR DGAFTDPIEA 60 VHPHRHSMSA PPPGVDFSTA CSPSQLTLSF HGEVYVFDDV SAEKVQAVML LLGGYEVPGG 120 DHTGLKPQNQ RSAGDVYGRA MTPTLRAAAL RRFREKKKDR CFEKKIRYTV RKEVAHRMKR 180 NKGQFVSSKA SSEDIGSGSS DGNAYPGAVK EEHETSCKNC GTGSKHTPMM RRGPAGPRTL 240 CNACGLKWAN KVVLGQCPRN EALGTQDPSM * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 158 | RRFREKKKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028093061.1 | 8e-83 | GATA transcription factor 28-like isoform X2 | ||||
Swissprot | Q8H1G0 | 4e-57 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | F6I1U0 | 1e-78 | F6I1U0_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0038g00480.t01 | 2e-79 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-53 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1493s0002.1.p |