PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1490s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 111aa    MW: 13051.2 Da    PI: 11.5081
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1490s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-172267148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+ +l
  Kalax.1490s0003.1.p 22 RGNMSEDEEDLIKRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNLHL 67
                         89********************.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.559116IPR017930Myb domain
SuperFamilySSF466893.45E-21272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-10228IPR009057Homeodomain-like
PROSITE profilePS5129424.3641771IPR017930Myb domain
SMARTSM007173.2E-162169IPR001005SANT/Myb domain
PfamPF002492.0E-152267IPR001005SANT/Myb domain
CDDcd001677.11E-112467No hitNo description
Gene3DG3DSA:1.10.10.602.1E-202968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
LNRSGKSCRL RWLNYLKPGI KRGNMSEDEE DLIKRLHKLL GNRWSLIAGR LPGRTDNEIK  60
NYWNLHLKKR VLGERENLNT RLEPAIMRRN QLPTAITIMN AMQETQMRTR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2037140108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022732259.15e-40transcription factor MYB114-like
SwissprotQ388506e-35MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A061GJG63e-38A0A061GJG6_THECC; Myb domain protein 5 isoform 2
TrEMBLA0A061GSC73e-38A0A061GSC7_THECC; Myb domain protein 5 isoform 1
TrEMBLA0A4D6Q5I04e-38A0A4D6Q5I0_9ASPA; Transcription factor
TrEMBLA0A4D6QCQ24e-38A0A4D6QCQ2_9ASPA; Transcription factor
STRINGEOY300354e-39(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-37myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]