PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.1484s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 308aa MW: 32423.4 Da PI: 6.7943

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.1484s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.1e-06	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk+Fs++ L H++ H Kalax.1484s0001.1.p 69 HVCKYCGKVFSTSQALGGHQNGH 91 79*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-5	65	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.48E-7	65	96	No hit	No description
Pfam	PF13912	1.3E-6	69	92	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.759	69	96	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MNKGKKDDED VDVNNNIATV TSLSLALVIA PQAAGGSSGA GGERMSSRHQ SEPENVVERS 60 NSGGGRKDHV CKYCGKVFST SQALGGHQNG HKKEREADRF RESLDKIMGR EPNASNRYHP 120 YLNFPPNNNS RLEGLNLGGG GFTSRQPLYQ LPHSALLASG QGQGAGVPMQ MRAPPPPVPR 180 FGGQGFAQRF GSWSEFVKRP NAASGEGSSS SRSGGGSSVV QRLSYLPGGI GFRPNAISSA 240 IVDPNVNPNC NKDSNLNPSS NANANPDAND NRNATGEADA NVPMVAADPG DGNEEDDERE 300 LDLTLRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	2e-10	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.1484s0001.1.p