PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1453s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 334aa    MW: 37277.8 Da    PI: 6.5035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1453s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-153077148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l+ +  + G g+W+ +ar  g+ R++k+c++rw +yl
  Kalax.1453s0006.1.p 30 KGLWSPEEDEKLISYMLRNGQGCWSDVARNAGLQRCGKSCRLRWINYL 77
                         678*******************************************97 PP
2Myb_DNA-binding537.8e-1783126146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++++ E+el+v+++ +lG++ W+ Ia++++ gRt++++k++w++
  Kalax.1453s0006.1.p  83 RGAFSPHEEELIVQLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 126
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-232380IPR009057Homeodomain-like
PROSITE profilePS5129416.2652577IPR017930Myb domain
SuperFamilySSF466892.73E-2828124IPR009057Homeodomain-like
SMARTSM007171.8E-112979IPR001005SANT/Myb domain
PfamPF002493.3E-143077IPR001005SANT/Myb domain
CDDcd001678.44E-103377No hitNo description
PROSITE profilePS5129423.85678132IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2581131IPR009057Homeodomain-like
SMARTSM007177.5E-1682130IPR001005SANT/Myb domain
PfamPF002499.6E-1583126IPR001005SANT/Myb domain
CDDcd001672.76E-1185125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRKPAVDYSS ITPPSSSSSS VKMGNGKLRK GLWSPEEDEK LISYMLRNGQ GCWSDVARNA  60
GLQRCGKSCR LRWINYLRPD LKRGAFSPHE EELIVQLHSL LGNRWSQIAA RLPGRTDNEI  120
KNFWNSTIKK RPKNNALLSN TILPSPSNDQ CSLGLMYMQQ NHQHHLIHQS SNNNIFMAPA  180
DAATCSYMDH SSSSGSSSSP SMVLNHMNTN PTSLLMSCDM LLDDQSLVDI YSFGDGLVEQ  240
YFPPLETIVT SSNTSMSFND NNNILEAGVN KVGHHQQRHI MEAADRYSCG SDVQEKLSCD  300
SFGETNIRLG EWDLEELMRS SETAYSVPHI DLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-282213119127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982095.18e-78PREDICTED: transcription factor MYB46
RefseqXP_021278278.11e-77transcription factor MYB46
TrEMBLW9RIA14e-75W9RIA1_9ROSA; Transcription factor
STRINGXP_010102340.17e-76(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.17e-67myb domain protein 46