PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.1431s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 193aa MW: 20798.4 Da PI: 6.0633 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.7 | 8.6e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ e++ C ++ lC+ C ++ H H++vpl Kalax.1431s0004.1.p 4 QCDSCGLAEAEVLCCADEAVLCAVCDEAVHTAnklsskHQRVPL 47 7******99*********************65889999999986 PP | |||||||
2 | zf-B_box | 29.7 | 1.3e-09 | 59 | 100 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ ++e + +fC +++ llC++C + +H+ H++ Kalax.1431s0004.1.p 59 PPCDICQERRGYIFCLEDRALLCRNCDVGTHNAnaytwaHRR 100 67*****************************76888888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.007 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.13E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 9.1E-12 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.5E-11 | 56 | 103 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.30E-5 | 59 | 89 | No hit | No description |
Pfam | PF00643 | 1.4E-7 | 59 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.873 | 61 | 103 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MKIQCDSCGL AEAEVLCCAD EAVLCAVCDE AVHTANKLSS KHQRVPLLKR PPSTAACSPP 60 CDICQERRGY IFCLEDRALL CRNCDVGTHN ANAYTWAHRR LLITGVQVAL QSFSSAKHVG 120 KMECLSSWPS SSASPSGPGH RQEEQVLQGN GEMEMELAAS SSDTTAGFPS QQTHTAATGF 180 MDQWPAVQDI HY* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019071822.1 | 1e-58 | PREDICTED: B-box zinc finger protein 23 | ||||
Swissprot | Q9SYM2 | 7e-42 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A438HGR5 | 2e-57 | A0A438HGR5_VITVI; B-box zinc finger protein 22 | ||||
TrEMBL | A5BZK6 | 2e-57 | A5BZK6_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0089g01280.t01 | 4e-58 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78600.1 | 7e-44 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.1431s0004.1.p |