PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1420s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 520aa MW: 58446.2 Da PI: 7.5257 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.5 | 5.7e-49 | 32 | 159 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ Kalax.1420s0002.1.p 32 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 120 79***************************.89***************888889************************************* PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + s +++ +glkktLvfy+g+apkg +t+W+m+eyrl Kalax.1420s0002.1.p 121 IRSDnlSRASIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 159 **98777888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-55 | 31 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.426 | 31 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 33 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MSINKSVNDE QRLVEEQEDR QEAGDRQQEL VMPGFRFHPT EEELVEFYLR RKVEGKRFNV 60 ELITFLDLYR YDPWELPAMA AIGEKEWFFY VPRDRKYRNG DRPNRVTTSG YWKATGADRM 120 IRSDNLSRAS IGLKKTLVFY SGKAPKGIRT SWIMNEYRLP HHETEKHHRQ YQHQQAEISL 180 CRVYKRVGVE DHPSLPRSLP SNSSMRPSST SSSRGSGQSS NSERRNHSNN NHQYTAASVE 240 RSNAFQAAFG ASVGLLSSHQ HHHQHLFIDN NCITANDATT DGSSSNTTTT TTDNVTTTLG 300 LSKNNNDNNN AIDPPAAANA ALSNKGNDSY CFGGTAATVL PSSSSSVLGL LLAEEAHHHH 360 MHHQAKMNML MRSPNDNYAE DTSSCIWKTK TQFAGASSSS LMVTNKLYQG SNINADDELH 420 RLVLNYHQQQ PLNQQLIQFH SSHHNLDSHH HPTTSQFSNV ILPSQSHLLS LNNSLPGTSL 480 NSNTTNPAAA FSDRLWEWNP IISEGNRSEY NSNNNSPFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-54 | 21 | 186 | 7 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-54 | 21 | 186 | 7 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-54 | 21 | 186 | 7 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-54 | 21 | 186 | 7 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-54 | 21 | 186 | 7 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-54 | 21 | 186 | 7 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021615085.1 | 1e-132 | NAC domain-containing protein 35 isoform X2 | ||||
TrEMBL | A0A0M5JHG9 | 1e-131 | A0A0M5JHG9_MANES; NAC transcription factors 10 | ||||
STRING | cassava4.1_009166m | 1e-132 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-101 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1420s0002.1.p |