PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1396s0003.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 536aa MW: 60271.6 Da PI: 4.9889 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.2e-13 | 309 | 353 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 e+ErrRR+++N+++ +Lr l+P + Kl+Ka+iL A++Y+k+L+ Kalax.1396s0003.5.p 309 LEAERRRRKKLNERLYKLRALVPIiS------KLDKASILVDAIDYMKQLK 353 589*********************66......*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.0E-17 | 17 | 165 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 1.78E-15 | 301 | 357 | No hit | No description |
PROSITE profile | PS50888 | 16.888 | 303 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-17 | 304 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-11 | 308 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-16 | 309 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-15 | 310 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.048 | 417 | 495 | IPR002912 | ACT domain |
CDD | cd02116 | 0.00651 | 418 | 475 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MKQSQVGARR SMLNFMDRLR PLVGSKGWDY CAVWRLSQDQ RFLELMGCCC AGADDEQDKL 60 KFLVWPQLPC QDTVFQHQRT ECCDHLCHLP SSVPLNSDIY AEAFFSSQPR WLNVNLNTFS 120 DPQAMAKSVE QELVGTQVLI PVLGGLVELF VAKQVAEDKS VVDFIAAQCA IPLELDALLT 180 SSLQTRTNPA EENPQPDAER SHASPSSSYQ FHQPEANNTN QQACEMSSPK DFSQQFNCDS 240 AAENEPPNNY AMMMSGGSGS ASDMPSQSKD GVRLEAGRSD YTSDCSDQID DEDEAKCRRR 300 NGKCQSKNLE AERRRRKKLN ERLYKLRALV PIISKLDKAS ILVDAIDYMK QLKKQVEELR 360 KELEQESDNK GDQTPAESVS EFVAPNNRNV ANPLGHEKVQ QMEPQVEVTP VDGSKFFIRV 420 FCEQKPGGFV RLLEALSSLG LEVTNVNVTN YRMLVSNVFQ VEMTRDDIDD HHVAADDLRK 480 SLLELTQIPV EAPWPDPLPD TTSDMPEYGV RADNHFPHHH ALLNHHTSPY HLHHN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 297 | 317 | RRRNGKCQSKNLEAERRRRKK |
2 | 311 | 318 | ERRRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018841495.1 | 1e-137 | PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2 | ||||
TrEMBL | A0A2I4GCB4 | 1e-136 | A0A2I4GCB4_JUGRE; transcription factor ABORTED MICROSPORES-like isoform X2 | ||||
STRING | EMJ01503 | 1e-132 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 2e-86 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1396s0003.5.p |