PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1396s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 563aa    MW: 63465.3 Da    PI: 5.0624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1396s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.5e-13336380655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           e+ErrRR+++N+++ +Lr l+P  +      Kl+Ka+iL  A++Y+k+L+
  Kalax.1396s0003.1.p 336 LEAERRRRKKLNERLYKLRALVPIiS------KLDKASILVDAIDYMKQLK 380
                          589*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-1517192IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.14E-15328384No hitNo description
PROSITE profilePS5088816.888330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17331392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-11335379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-16336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15337392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.048444522IPR002912ACT domain
CDDcd021160.00692445502No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MKQSQVGARR SMLNFMDRLR PLVGSKGWDY CAVWRLSQDQ RFLELMGCCC AGADDEQDKL  60
KFLVWPQLPC QDTVFQHQRT ECCDHLCHLP SSVPLNSEFD LISSNLFDSS KIRFQILTRV  120
LFFCSIYAEA FFSSQPRWLN VNLNTFSDPQ AMAKSVEQEL VGTQVLIPVL GGLVELFVAK  180
QVAEDKSVVD FIAAQCAIPL ELDALLTSSL QTRTNPAEEN PQPDAERSHA SPSSSYQFHQ  240
PEANNTNQQA CEMSSPKDFS QQFNCDSAAE NEPPNNYAMM MSGGSGSASD MPSQSKDGVR  300
LEAGRSDYTS DCSDQIDDED EAKCRRRNGK CQSKNLEAER RRRKKLNERL YKLRALVPII  360
SKLDKASILV DAIDYMKQLK KQVEELRKEL EQESDNKGDQ TPAESVSEFV APNNRNVANP  420
LGHEKVQQME PQVEVTPVDG SKFFIRVFCE QKPGGFVRLL EALSSLGLEV TNVNVTNYRM  480
LVSNVFQVEM TRDDIDDHHV AADDLRKSLL ELTQIPVEAP WPDPLPDTTS DMPEYGVRAD  540
NHFPHHHALL NHHTSPYHLH HN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324344RRRNGKCQSKNLEAERRRRKK
2338345ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.18e-81bHLH family protein