PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1373s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YB | ||||||||
Protein Properties | Length: 136aa MW: 14869.5 Da PI: 4.7461 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 181.7 | 6.2e-57 | 22 | 117 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 reqdrflPianvsr+mkk+lPanakisk+aketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGf++y epl+vyl+kyr Kalax.1373s0003.1.p 22 REQDRFLPIANVSRLMKKALPANAKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMGTLGFDEYDEPLRVYLQKYR 111 89**************************************************************************************** PP NF-YB 92 elegek 97 e+egek Kalax.1373s0003.1.p 112 EIEGEK 117 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.7E-53 | 19 | 129 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.33E-39 | 24 | 123 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-27 | 27 | 91 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.1E-21 | 55 | 73 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 58 | 74 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.1E-21 | 74 | 92 | No hit | No description |
PRINTS | PR00615 | 4.1E-21 | 93 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MAESDNDSGG NYDGIGHDFL AREQDRFLPI ANVSRLMKKA LPANAKISKE AKETVQECVS 60 EFISFVTGEA SDKCQREKRK TINGDDLLWA MGTLGFDEYD EPLRVYLQKY REIEGEKSAG 120 GKAGERDGNS GGGNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-47 | 16 | 112 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010252766.1 | 2e-70 | PREDICTED: nuclear transcription factor Y subunit B-3-like | ||||
Swissprot | O23310 | 9e-68 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A1U7ZM17 | 5e-69 | A0A1U7ZM17_NELNU; nuclear transcription factor Y subunit B-3-like | ||||
STRING | XP_010252766.1 | 8e-70 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 3e-65 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1373s0003.1.p |
Publications ? help Back to Top | |||
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