PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1361s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 349aa    MW: 38620.9 Da    PI: 5.3362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1361s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1868118155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  +g+WvAeIr+p   + r  r +lg+f t eeAa a+++a+ +++g
  Kalax.1361s0005.1.p  68 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTSEEAALAYDEAAIAMYG 118
                          56*****999.**********8...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1468118IPR001471AP2/ERF domain
CDDcd000182.12E-3268127No hitNo description
Gene3DG3DSA:3.30.730.105.3E-3169127IPR001471AP2/ERF domain
SMARTSM003802.0E-3669132IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2169127IPR016177DNA-binding domain
PROSITE profilePS5103222.22169126IPR001471AP2/ERF domain
PRINTSPR003672.4E-107081IPR001471AP2/ERF domain
PRINTSPR003672.4E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSTRGNLDKT KTRIRKRTGT KSVAETIAKW KQYNVMLDSE GIPVRRVPAK GSKKGCMKGK  60
GGPENYHCNY RGVRQRTWGK WVAEIREPNR GSRLWLGTFP TSEEAALAYD EAAIAMYGSC  120
ARLNMPDRDT KKEVFEENSK DSSTIVSTCC SGSSSTASNN SDALKEEKLS CGASDNMRRH  180
CQRKLVVPKL ENDARSSNQN LAVPFVMDEA GSKNIEAEAR EDLAVSMDVN QVDGVHEWLQ  240
MQSYSRVELF DAHELLSEIE NNPLKTDTRQ DEGHPLTDQF SALNSSNTKL TGPVDLSSQP  300
QNPDAGLFQG VDVGLQGNSL DLSFLQPGRQ EDEAQCAFDY TSFFDLDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1969128262ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.29e-32DRE-binding protein 2A