PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1353s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 23816.4 Da PI: 8.694 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 79 | 127 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f t+eeAa+a+++a+ +++g Kalax.1353s0004.1.p 79 YRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFPTPEEAARAYDQAAIRIRG 127 9*******.**********954...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.75E-23 | 78 | 136 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.146 | 78 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-14 | 78 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-33 | 78 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 78 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.28E-32 | 79 | 136 | No hit | No description |
PRINTS | PR00367 | 2.4E-11 | 79 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MCGGAVISSF IGGNRDRNLT TRDFWHQLDP SSDLFGFNST TNSKTPITAA DQNPKEKKSG 60 NGTNGAAGGK PPRVRKTAYR GIRRRPWGKW AAEIRDPRKG VRVWLGTFPT PEEAARAYDQ 120 AAIRIRGDKA KLNFPEKRRR VEPDELTHPS YERVGPASAG ADDGSLICGQ NQRSVAGSGL 180 EDTISDLESL LGLDDGSGSG YLNGLGDPVD LGWMDGDWSI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-22 | 79 | 137 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 140 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017975879.1 | 3e-54 | PREDICTED: ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 5e-39 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A061EPL0 | 5e-53 | A0A061EPL0_THECC; Ethylene-responsive element binding protein, putative | ||||
STRING | EOY06588 | 8e-54 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 4e-41 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1353s0004.1.p |