PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1348s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 25218.6 Da PI: 6.679 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.3 | 2.3e-09 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r tf kRr ++ K +E+SvL++ ++ +i+s+ Kalax.1348s0003.1.p 11 IPNYTARRATFRKRRDSLIRKLNEISVLTGGAACGVILSP 50 789******************************9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.717 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.1E-11 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-16 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.74E-21 | 2 | 83 | No hit | No description |
PRINTS | PR00404 | 3.5E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-9 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MTRKKIQLAW IPNYTARRAT FRKRRDSLIR KLNEISVLTG GAACGVILSP FEGDPPVFYP 60 QAINEIIDRF FSLPEFEQQK RLVTAESYIH DEISKLQEII QKEHKMIREA EVSYRMNSIH 120 FHGSHIATLS YDETSDLFWY FEEMKNKCEL RLNQLDPNAS APHPLHPETM MMQEPQMGMN 180 DPIWLSAGNP VNASFPHPPP PFESHHQAAG FYNNNTGY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKIQLAWIPNYTARRATFRKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 2e-24 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1348s0003.1.p |