PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1332s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 405aa    MW: 44202.8 Da    PI: 7.4464
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1332s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.67.4e-4065126263
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                          +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rkn+ksss
  Kalax.1332s0004.1.p  65 QDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNRKSSS 126
                          6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2854119IPR003851Zinc finger, Dof-type
PfamPF027014.4E-3366123IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.12469123IPR003851Zinc finger, Dof-type
PROSITE patternPS01361071107IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MALTSLQVCM DMENSASDQH HHWLQGTMHE DALMDSSSSP SGGDILACSG PSPILMSERR  60
LRPPQDQALK CPRCDSTHTK FCYYNNYSLS QPRYFCKTCR RYWTKGGTLR NIPVGGGCRK  120
NRKSSSSSSK KPSSSEPLQV YQPLSSVPPP PINNTQINHN PNSSMTTMMM TIPNNTSDLQ  180
LSFQNNEGFP FSHMNYIGSG ASRNGSRGGM GGGYSESRSL FNSIALLESS SSGGLMRPID  240
FLDHKQVESA LVMNNSTSKS SSNNQLGYFS SQFAGGYGSN NNSHHASLLN GGNVLQTNLG  300
YAHEVGLNSS SSSYVDRDNT VGQFEYYSGL HGQHPENVPM DCEAKPDKKM LAIEWQQEAT  360
REESYGPYHL GSAWSGMPSS GSYHHHHNQN QLLLPSTAAN NSLV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763886e-51AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBankAM0843606e-51AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.14e-44Dof family protein