PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1328s0004.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 812aa    MW: 89542.8 Da    PI: 7.9869
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1328s0004.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.7e-18316415198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ grlv+pkk+ae++   ++++e+  l+++d +gr+W +++++  +++s++yvl+ G  ++ ++ +L +gD v+F++ +
  Kalax.1328s0004.3.p 316 FEKTLSASDAGRIGRLVVPKKCAEAYfpHISQPEGLPLKVQDVKGREWVFQFRFwpNNNSRMYVLE-GVTSYIQSMQLLAGDKVTFSRLE 404
                          99**************************556667778***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Kalax.1328s0004.3.p 405 -PEGKLVMGFRK 415
                          .77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-29309417IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20313415IPR015300DNA-binding pseudobarrel domain
CDDcd100173.55E-22314415No hitNo description
PROSITE profilePS5086311.293316417IPR003340B3 DNA binding domain
PfamPF023621.2E-15316415IPR003340B3 DNA binding domain
SMARTSM010198.9E-21316417IPR003340B3 DNA binding domain
PROSITE profilePS5105013.35538588IPR011124Zinc finger, CW-type
PfamPF074962.7E-11543585IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MAARTCFNRS CAEVKSTRSS NGWRLSTGEY SILCDRCASL YEDGRFCEVF HSQAPGWVPC  60
QSCNKHIHCG CIVSSHTFML LDAGGIECIT CAKRSGRHIQ PGNLSYPPPP PPHGVHRSPF  120
SERIRDLSTK SWSQFSGVGP MQWREAPSLY NSFVAQSEAH TRVPCDIGIS NALIKNKSNE  180
DFSLNFLEKK IQRETDWSMR RIDRNSGAPM EMSSSKEDLS TLRLEHVLTN SSANESNSGI  240
AASGSLLRAA PSSETPNSLH SIYSSEVDPS CKTPTQNGRS HADGKSKNQL LIRYLPRTTD  300
DELQKIAGSS EIKPLFEKTL SASDAGRIGR LVVPKKCAEA YFPHISQPEG LPLKVQDVKG  360
REWVFQFRFW PNNNSRMYVL EGVTSYIQSM QLLAGDKVTF SRLEPEGKLV MGFRKASKGS  420
TDLGEHPNKI SNNGDSNAGI NLNLSNADKS GYIAKDVTNV KSSVSRKRKN SSIFSKDRHL  480
LFESMDLYEL KITLEEAQRL IRPSPNHLSH VVIVENEIEE YEDCPVIGKP TIFTTDQMGK  540
SIQWAQCEDC LKWRRLSADV LLPAKWTCSE NYSDLERSSC SSPQDISAEH LADLLFSKNQ  600
SASKKIKAVT TKHPRHRIGC SCIVCIQPPS GKGRKHKHTC DCTVCLTVKR RFRTLMLRRE  660
KKQQEKDAEA ASEKLQRCSS LLEKSLENDP LTYDNSSAST PTLKEVTGDG SVDISCGNKS  720
SASPLKDQID LNIKPERDDP VLSYNAAGAV DQMNSSIHGA VVEVADNPTQ TVEVVETTVD  780
GTDITSLTSQ PAAAASANAH PEKESTTKTS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C8e-582964171124B3 domain-containing transcription repressor VAL1
5yzz_C8e-582964171124B3 domain-containing transcription repressor VAL1
5z00_C8e-582964171124B3 domain-containing transcription repressor VAL1
5z00_G8e-582964171124B3 domain-containing transcription repressor VAL1
5z00_K8e-582964171124B3 domain-containing transcription repressor VAL1
5z00_M8e-582964171124B3 domain-containing transcription repressor VAL1
6j9a_A9e-582964172125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467887.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G41e-153Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067G7Y20.0A0A067G7Y2_CITSI; Uncharacterized protein
STRINGXP_006467887.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-126HSI2-like 1