PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.1309s0006.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ARF | ||||||||
Protein Properties | Length: 907aa MW: 100495 Da PI: 6.6613 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Kalax.1309s0006.5.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214 99*****************************8544444..48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ Kalax.1309s0006.5.p 215 --WNDKNQLLLGIRRA 228 ..7888889****997 PP | |||||||
2 | Auxin_resp | 121.1 | 8.6e-40 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sd+dpvrWpnS+Wrs+k Kalax.1309s0006.5.p 253 AAHAASTNSRFNIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDSDPVRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-48 | 113 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-42 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.47E-21 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 5.0E-22 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.52 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-34 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.7E-8 | 765 | 862 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 6.54E-7 | 767 | 848 | No hit | No description |
PROSITE profile | PS51745 | 24.319 | 773 | 857 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 907 aa Download sequence Send to blast |
MRLSSAGFSP QPQEGEKRVL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE 60 VDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDP YLPADFGAPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAK DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRASR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAASTN SRFNIFYNPR ASPSEFVIPL TKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DSDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP FRLKRPWPAG LPSLNGFKEE DLGMNSPLMW LRGDNGQTLN FQGMGANPWM 420 QMQPRMDAML GLQSDMYQAM AAAAFQEMRA VDPTKQTPPP NLLQFQQPQS VGNAPACLIP 480 PQMLNQAQAQ LSYLQSLQES QAQAQAQMIA QSQARSQSQS HSHSQSHSVQ TSLIQGQLQH 540 QSSFNSHQGQ QDQRQPQRQQ MQSIDPQRMP NMVSNIPQYV SNAQSQSPAM QPVSSLCQQQ 600 SFTGSDGNLV SVSSPIVSPL QSLLGSYTTD ESPHLFSLPR NAVPVVSSSD WPSKRVALER 660 DPHPHLPSPG SQALLSQLEQ QLGESQVNML HNNVTLPPFP GRECSIDQNG ISNLRGVGGD 720 CESSSMPFAS SSFMSNSGSD FTLNPTMTPS SCIDESGFLQ SPENVTEANA LNKTFVKVYK 780 SGSFGRSLDM AKFSSYQELR SELARMFGLD GQLEDPKRSG WQLVFVDREN DVLLLGDDPW 840 PEFVNSVWCI KILSPQEVQQ MGKRGLELLN SVPIQRLSSN GCEEYSSRQE SRNLSSGITA 900 VGSLEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 13 | 357 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021640724.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | A0A2C9UGD0 | 0.0 | A0A2C9UGD0_MANES; Auxin response factor | ||||
STRING | cassava4.1_001357m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.1309s0006.5.p |
Publications ? help Back to Top | |||
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